Previous phases

Previous phases

Jamboree

The Jamboree is a face-to-face meeting of participants that took place after all submissions were made to the website and the sbv IMPROVER Network Verification Challenge 2 (NVC2) is closed.

The 2015 Jamboree was held 15th-18th June 2015 in Barcelona, Spain.

On Wednesday 17th June 2015, the conference was open to the scientific community.

The meeting had two main objectives:

  • Review and agree on the existence of a selection of edges and evidences that were disputed by challenge participants during the online verification process.
  • Gather lessons learned from the Network Verification Challenge.

The Jamboree brought together:

  • The “best performing” participants in the Network Verification Challenge, as determined by reputation points;
  • Subject matter experts;
  • The team of scientists who generated the initial networks models.

Beyond the Jamboree

The challenge organizers hope that the platform designed for the NVC will have ongoing impact after the Jamboree. To this end, the following activities are planned:

  • The outcomes of the NVC and Jamboree will be reflected in the network models to summarize and encapsulate the most relevant knowledge on human lung biology;
  • The updated network models will be made available to the entire scientific community through the NVC website;
  • The online verification process on the NVC website will be reopened to enable the continued development and verification of these networks as well as other network models.

Best performers of NVC II

We would like to thank all participants that took part in the Network Verification Challenge.

The best performers were announced at the sbv IMPROVER Jamboree 2015 in Barcelona, Spain and the identity of the Best Performers was published in Nature (Volume 523 Number 7562, 30 July 2015, page 495).

Best performers of NVC II

From left to right: » Modesto Berraquero Perez » David Garrido Alfaro » Manuel González-Veléz Racero » Rubén Amián Ruiz » Alejandro Ferreiro Morales » Ángela María Fajardo Lacave » Sergei Davidyan » Ganna Androsova » Manuel Peitsch (Philip Morris International, Organizer and Host) » Irina Shvydchenko » Aishwarya Alex Namasivayam » Borislav Simovic » Neha Rohatgi » Rajesh Mandarapu » Susana Martinez Arbas » Jorge Val Calvo » Swapna Menon » Shaman Narayanasamy » Julia Hoeng (Philip Morris International, Organizer and Host) » Dheeraj Reddy

Not in the picture: » Maria Biryukov » Ángel Herrera Insua

Best performers of NVC I

We would like to thank all participants that took part in the Network Verification Challenge.

The best performers were announced at the sbv IMPROVER Jamboree 2014 in Montreux, Switzerland and the identity of the best performers was published in Nature (Volume 509 Number 7499, 8 May 2014, page 127).

Best performers of NVC I

From left to right: » Qingxian Lu » Jennifer Park (Selventa, Organizer) » Aravind Tallam » Julia Hoeng (Philip Morris International,Organizer and Host) » Larisa Fedorova » Svetlana Guryanova » Edward Sanders » Galina Igorevna Koroleva » Gema Villa Fombuena » Rahul Kumar » Norberto Díaz-Díaz » Swapna Menon » Ilona Binenbaum » Mariya Zelikman » Ilya Yudkevich » Manuel Peitsch (Philip Morris International, Organizer and Host)

Not in the picture: » Vladimir Bondarenko » Oleg V. Bulgakov » Vera Cherkasova » Julia Guzova » Elena Kozhemyakina » Noa Lavid » Yael Ouliel » Samantha C. Peterson » Alexander Prokhorov » Sarah Schrier » Golan Schwaitzer Neta » Irina Shvydchenko » John Wu

  • Ilona Binenbaum 
    Systems Bioengineering Group - National Technical University of Athens, Greece 
    Network Contribution: Angiogenesis, Hypoxic Stress, Growth Factor, Notch, Dendritic Cell Signaling, Apoptosis, Osmotic Stress, Fibrosis
  • Vladimir Bondarenko 
    Touro University Nevada, United States 
    Network Contribution: Hypoxic Stress, Oxidative Stress
  • Oleg V. Bulgakov 
    University of Pittsburgh, United States 
    Network Contribution: Cell Cycle, Hedgehog, Oxidative Stress
  • Vera Cherkasova 
    Network Contribution: Mechanisms of Cellular Senescence, Oxidative Stress, Dendritic Cell Signaling
  • Norberto Díaz-Díaz 
    Intelligent Data Analysis Group (DATAi), School of Engineering, Pablo de Olavide University, Spain Network Contribution: Response to DNA Damage, Autophagy, Cell Cycle, ER Stress
  • Larisa Fedorova 
    University of Toledo, United States 
    Network Contribution: NK Signaling, Neutrophil Signaling, B-cell, NFE2L2, Necroptosis, Autophagy, Hypoxic Stress, Fibrosis, PGE2, NFE2L2
  • Svetlana Guryanova 
    Shemyakin & Ovchinnikov Institute of Bioorganic Chemistry, Russian Federation 
    Network Contribution: Neutrophil Signaling, Macropohage Signaling, Senescence, B-cell, Cell Cycle, Notch, Calcium, th1, th17
  • Julia Guzova 
    Network Contribution: Oxidative Stress, MAPK, Nuclear Receptors
  • Galina Igorevna Koroleva 
    USAMRIID, United States 
    Network Contribution: B-cell, Neutrophil Signaling, Epigenetics, Tissue Damage, Nuclear Receptors
  • Elena Kozhemyakina 
    Network Contribution: Hedgehog, Regulation by Tumor Suppressors
  • Rahul Kumar 
    Institute of Microbial Technology, India 
    Network Contribution: Cell Cycle, Growth Factor, Apoptosis
  • Noa Lavid 
    Technion Institute, Israel 
    Network Contribution: Fibrosis, Apoptosis, Wound Healing
  • Qingxian Lu 
    Louisville University, United States 
    Network Contribution: Treg Signaling, Th17 Signaling
  • Swapna Menon 
    AnalyzeDat Consulting Services, India
    Network Contribution: Hox, Epigenetics, Growth Factors, Xenobiotic Metabolism Response
  • Yael Ouliel 
    Technion Institute, Israel 
    Network Contribution: ER Stress, Cell Cycle, Apoptosis, Neutrophil Signaling, Fibrosis, Cell Interaction
  • Samantha C. Peterson 
    Northeastern University, United States 
    Network Contribution: B-cell Signaling
  • Alexander Prokhorov 
    Shemyakin & Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, Russian Federation 
    Network Contribution: Cell Interaction, Hypoxic Stress, Oxidative Stress
  • Edward Sanders 
    Edward Sanders Scientific Consulting, Switzerland 
    Network Contribution: Oxidative Stress, Cell Cycle, Mechanisms of Cellular Senescence, Neutrophil Signaling, ECM Degradation, Autophagy, Apoptosis, Mapk, Clock, Cytotoxic T-cell Signaling, Th1 Signaling, Response to DNA Damage, Tissue Damage, Endothelial Innate Immune Activation, Epithelial Mucus Hypersecretion, Immune Regulation of Tissue Repair, Macrophage Signaling
  • Sarah Schrier 
    Massachusetts Institute of Technology, United States 
    Network Contribution: Dendritic Cell Signaling, Immune Regulation of Tissue Repair
  • Golan Schwaitzer Neta 
    Technion Institute, Israel 
    Network Contribution: Apoptosis, Angiogenesis, Cellular Senescence, Response to DNA Damage
  • Irina Shvydchenko 
    Kuban State University of Physical Education, Sport and Tourism, Russian Federation 
    Network Contribution: Neutrophil Signaling, Tissue Damage
  • Aravind Tallam 
    Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Luxembourg 
    Network Contribution: Macrophage Signaling, Immune reg tis rep
  • Gema Villa Fombuena 
    Pablo de Olavide University, Spain 
    Network Contribution: Growth Factor, Cell Cycle, Oxidative Stress
  • John Wu 
    Cal Biopharma, United States
    Network Contribution: Hox, Nuclear Receptors, Angiogenesis
  • Ilya Yudkevich 
    University of Manchester, United Kingdom, living in the United States 
    Network Contribution: Epigenetics, Cytotoxic T-cell Signaling, Fibrosis, Angiogenesis, Tissue Damage, Nk Signaling
  • Mariya Zelikman 
    University of Washington, United States 
    Network Contribution: Immune Reg of Tissue Repair, Th17 Signaling

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